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libfat is a library for accessing FAT file systems such as those on SD cards and USB mass storage devices. It is included as part of devkitPPC / libogc.
libfat is included as part of devkitPPC, just specify -lfat in LIBS section of your Makefile to start using it.
The following is a piece of sample code that illustrates using libfat to do a recursive directory listing of the SD card.